There is no need to worry too much about a cold air supply. This is a particularly overrated part of 'tuning' as most cars engine bays tend to be around ambient temps once the car is moving, and even then, a 10C drop in intake temps only provides something like 1bhp extra, which is undetectable.
As has been said, most IRTB setups dont use a map sensor (there is some confusion in this thread already in the difference between map and maf, but i wont go into that here, suffice to say the mx5 uses a maf not map as standard) due to a flucuating vacuum signal. You can run all four intakes into one, and use something like a fuel filter to dampen the signal if you wish. I will be running the car initially on whats called alpha N, which is using a combination of the TPS and air temp (ill be using a GM open element air temp sensor). Ill connect up a map and monitor its signals before deciding whether to incorporate that.
Running injectors further away from the head can help the mix, but this is really only relevant at high rpms, usually above what the car can rev to as standard. My setup will be using the stock injector positions as that way I can retain the OE fuel rail.
The FPR shouldnt be an issue, as ill just disconnect the vacuum reference which will mean itll have a constant pressure, and (if my brain is working) it will default to the 'higher' pressure when I do this.
IRTBs will never be able to compete with a turbo set up for power or speed. Those who have or want IRTBs are fully aware of this, and tend to hold power delivery, and in particular the noise, as a higher priority

The ECU i settled on is a Megasquirt, which is a DIY job. No doubt ill have many frustrating nights ahead of me, and then hopefully one or two sweet sweet eureka moments

Once i have the ECU running, ill be using a spare head I have to play with, perhaps trying to modify the ports and raise compression, maybe some exhaust modifications, remove the cat etc. But thats something to think about later. One step at a time...